Install and set up Miniforge3
Clone git repository and submodules:
git clone --recurse-submodules https://github.com/hermidalc/sksurv-bio-workflows.git
cd sksurv-bio-workflowsTo install conda environment on Intel architecture hardware:
mamba env create -f envs/sksurv-bio-workflows-mkl.ymlOtherwise:
mamba env create -f envs/sksurv-bio-workflows.ymlActivate the environment:
mamba activate sksurv-bio-workflowsInstall non-conda packages into environment:
./utils/install_nonconda_r_pkgs.RUpdate the git repository and submodules:
git pull
git submodule update --recursiveTo update the conda environment on Intel architecture hardware:
mamba env update -f envs/sksurv-bio-workflows-mkl.ymlOtherwise:
mamba env update -f envs/sksurv-bio-workflows.yml